Bug-Database: https://github.com/dib-lab/khmer/issues
Bug-Submit: https://github.com/dib-lab/khmer/issues/new
Changelog: https://raw.githubusercontent.com/dib-lab/khmer/master/ChangeLog
Funding: >
 AFRI Competitive Grant no. 2010-65205-20361 from the USDA NIFA, National
 Human Genome Research Institute of the National Institutes of Health
 under Award Number R01HG007513
Reference:
 - Author: >
    Crusoe, Michael R. and Alameldin, Hussien F. and Awad, Sherine and
    Bucher, Elmar and Caldwell, Adam and Cartwright, Reed and Charbonneau,
    Amanda and Constantinides, Bede and Edvenson, Greg and Fay, Scott and
    Fenton, Jacob and Fenzl, Thomas and Fish, Jordan and Garcia-Gutierrez,
    Leonor and Garland, Phillip and Gluck, Jonathan and González, Iván
    and Guermond, Sarah and Guo, Jiarong and Gupta, Aditi and Herr,
    Joshua R. and Howe, Adina and Hyer, Alex and Härpfer, Andreas and
    Irber, Luiz and Kidd, Rhys and Lin, David and Lippi, Justin and
    Mansour, Tamer and McA'Nulty, Pamela and McDonald, Eric and Mizzi,
    Jessica and Murray, Kevin D. and Nahum, Joshua R. and Nanlohy, Kaben
    and Nederbragt, Alexander Johan and Ortiz-Zuazaga, Humberto and Ory,
    Jeramia and Pell, Jason and Pepe-Ranney, Charles and Russ, Zachary N
    and Schwarz, Erich and Scott, Camille and Seaman, Josiah and Sievert,
    Scott and Simpson, Jared and Skennerton, Connor T. and Spencer, James
    and Srinivasan, Ramakrishnan and Standage, Daniel and Stapleton,
    James A. and Stein, Joe and Steinman, Susan R and Taylor, Benjamin
    and Trimble, Will and Wiencko, Heather L. and Wright, Michael and
    Wyss, Brian and Zhang, Qingpeng and zyme, en and Brown, C. Titus
   Title: >
    The khmer software package: enabling efficient sequence analysis
   Publisher: F1000Research
   Year: 2015
   DOI: 10.12688/f1000research.6924.1
   URL: http://dx.doi.org/10.12688/f1000research.6924.1
   Type: article
 - Author: >
    Pell, Jason and Hintze, Arend and Canino-Koning, Rosangela and
    Howe, Adina and Tiedje, James M. and Brown, C. Titus
   title: >
    Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
   Volume: 109
   Number: 33
   Pages: 13272-13277
   Year: 2012
   DOI: 10.1073/pnas.1121464109
   Eprint: http://www.pnas.org/content/109/33/13272.full.pdf
   Journal: Proceedings of the National Academy of Sciences
   Type: article
   URL: http://www.pnas.org/content/109/33/13272
 - Author: >
    C. Titus Brown and Adina Howe and Qingpeng Zhang and Alexis B.
    Pyrkosz and Timothy H. Brom
   Title: >
    A Reference-Free Algorithm for Computational Normalization of
    Shotgun Sequencing Data
   Year: 2012
   url: http://arxiv.org/abs/1203.4802
   Eprint: http://arxiv.org/pdf/1203.4802v2
 - Author:
    Zhang, Qingpeng AND Pell, Jason AND Canino-Koning, Rosangela
    AND Howe, Adina Chuang AND Brown, C. Titus
   Journal: PLoS ONE
   Title: >
    These Are Not the K-mers You Are Looking For: Efficient Online
    K-mer Counting Using a Probabilistic Data Structure
   Year: 2014
   Month: 07
   Volume: 9
   DOI: 10.1371/journal.pone.0101271
   Number: 7
   Type: article
   Eprint: "http://www.plosone.org/article/fetchObject.action?uri=info:doi/\
    10.1371/journal.pone.0101271&representation=PDF"
 - Author: Doring, Andreas and Weese, David and Rausch, Tobias and Reinert, Knut
   Title: SeqAn An efficient, generic C++ library for sequence analysis
   Journal: BMC Bioinformatics
   Volume: 9
   Year: 2008
   Number: 1
   Pages: 11
   Type: article
   DOI: 10.1186/1471-2105-9-11
   PMID: 18184432
   ISSN: 1471-2105
 - Author: Qingpeng Zhang and Sherine Awad and C. Titus Brown
   Title: >
    Crossing the streams: a framework for streaming analysis of short DNA
    sequencing reads
   Year: 2015
   eprint: PeerJ Preprints 3:e1100
   url: https://dx.doi.org/10.7287/peerj.preprints.890v1
Repository-Browse: https://github.com/dib-lab/khmer
Repository: https://github.com/dib-lab/khmer.git
Registry:
 - Name: SciCrunch
   Entry: SCR_001156
 - Name: bio.tools
   Entry: khmer
 - Name: OMICtools
   Entry: OMICS_02560
 - Name: conda:bioconda
   Entry: khmer
